Last updated: 2020-11-30

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RSS-NET results

The following table reports enrichment Bayes factors (BFs) of 38 gene regulatory networks and 1 near-gene control network for the given trait. For each network, we evaluate BFs of the same baseline model (\(M_{0}\): \(\theta=0\) and \(\sigma^2=0\)) against 4 enrichment models (\(M_{1}\), \(M_{11}\), \(M_{12}\) and \(M_{13}\)). Rows are sorted by BFs based on \(M_{1}\) (the 2nd column).


LDSC and Pascal results

The following table reports minus log 10 enrichment \(P\)-values of LDSC and Pascal based on the same networks and GWAS data. Rows are sorted by LDSC-baselineLD \(P\)-values (the 3rd column). For display purposes only, all zero \(P\)-values are replaced with the smallest non-zero normalized floating-point number of the machine (i.e., \(-\log_{10}P=\) 307.6527).



─ Session info ───────────────────────────────────────────────────────────────
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 os       Ubuntu 20.04.1 LTS          
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 ui       X11                         
 language (EN)                        
 collate  en_US.UTF-8                 
 ctype    en_US.UTF-8                 
 tz       America/New_York            
 date     2020-11-30                  

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[2] /usr/local/lib/R/site-library
[3] /usr/lib/R/site-library
[4] /usr/lib/R/library